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NA-MIC Project Weeks

Welcome to the web page for the 36th Project Week!

This event was held virtually January 17-21, 2022. We recorded 131 registered attendees with 43% first time attendees from 25 countries. Participants worked in 37 Project Teams, and participated in 3 breakout sessions. New for this Project Week, two events were recorded - a Monai Label Workshop during the prepration weeks leading upto the event (recording available here), and the OHIF breakout session (recording available here).

If you have any questions, you can contact the organizers.

Before Project Week

  1. Register here, it is free!
  2. Attend one or more preparation meetings to present a project you intend to work on at PW, for which you are seeking collaborators or to join one of the projects proposed by others.
  3. Join the Discord server that will be used to communicate with your team during Project Week. Go to this page for more info on the use of Discord during PW.

During Project Week

Agenda

How to add this calendar to your own?

Projects (How to add a new project?)

VR/AR and Rendering

  1. Collaborative Slicer session (Csaba Pinter, Mónica Garcia, Jean-Christophe Fillion-Robin)
  2. AR in Slicer (Alicia Pose Díez de la Lastra, Javier Pascau, Gabor Fichtinger, Andras Lasso, Adam Rankin, Csaba Pinter, Lucas Gandel, Jean-Christophe Fillion-Robin)
  3. Slicer TMS Module (Loraine Franke, Lipeng Ning, Yogesh Rathi, Steve Pieper, Raymond Yang, Daniel Haehn)
  4. PRISM Rendering (Simon Drouin, Steve Pieper, Andrey Titov, Rafael Palomar)
  5. Echo VolumeRender UI (Samuelle St-Onge, Simon Drouin, Andrey Titov)
  6. Integration of Flir Thermal Camera (Juan Bautista Ruis Alzola, Robabeh Salehiozoumchelouei, Mónica García Sevilla, Yousef Rajaeitabrizi)

Image-guided therapy and low cost systems

  1. Low-Cost Ultrasound Training (David Garcia, Csaba Pinter, Rebecca Hisey, Leah Groves, Ahmed Mahran, Matt McCormick, Steve Pieper, …)
  2. Slicer-Liver (Rafael Palomar, Ole V. Solberg, Geir Arne Tangen, Gabriella D’Albenzio, Javier Pérez de Frutos)
  3. Visualization of catheter path based on an electromagnetic tracking with TMR sensors (Wenran Cai, Kazuaki Hara, Rina Nagano, Junichi Tokuda
  4. Integration of ROS and 3D Slicer using OpenIGTLink (Junichi Tokuda, Tamas Ungi, Simon Leonard, Axel Krieger, Mark Fuge)
  5. GPU Rigid Registration for Neuronavigation (Montreal IBIS System) (Gelel Rezig, Houssem Gueziri, Simon Drouin)
  6. NousNav: Low-cost neuronavigation system (Étienne Léger, Alexandra Golby, Sam Horvath, Sarah Frisken, David Allemang, Tina Kapur, Steve Pieper, Jean-Christophe Fillion-Robin, Sonia Pujol, Kelly Wang)
  7. Skin Surface Extraction for NousNav Registration (Reuben Dorent, Tina Kapur, Sarah Frisken, Mohammad Jafari, Samantha Horvath, Jean-Christophe Fillion-Robin, Harneet Cheema, Fryderyk Kögl)
  8. MR-US Landmarking for Neuronavigated surgery (Fryderyk Kögl, Harneet Cheema, Tina Kapur, Simon Drouin)
  9. Low-cost trackers (Steve Pieper, Gabor Fichtinger)
  10. sliCERR (Aditya Apte, Aditi Iyer, Eve LoCastro, Harini Veeraraghavan)
  11. Mandible Reconstruction Automatic Planning (Mauro I. Dominguez, Andras Lasso, Manjula Herath)

Segmentation/Classification

  1. Spine Segmentation (Ron Alkalay, Steve Pieper, …)
  2. Multi-organ segmentation (Murat Maga, Sara Rolfe, Andres Diaz-Pinto)
  3. Brain Mask Prediction (Raymond Yang, Jax Luo, Lipeng Ning, Cathy Yang, Steve Pieper, Daniel Haehn)
  4. Automatic Landmark Identification in 3D Cone-Beam Computed Tomography scans (Maxime Gillot, Baptiste Baquero, Antonio Ruellas, Marcela Gurgel, Elizabeth Biggs, Marilia Yatabe, Jonas Bianchi, Lucia Cevidanes, Juan Carlos Prieto)
  5. ALIIOS - Automatic Landmarks Identification for Intra OralScans (Baptiste Baquero, Maxime Gillot, Lucia Cevidanes, Juan Carlos Prieto, Najla Al Turkestani, Marcela Gurgel, Camila Massaro, Aron Aliaga, Maria Antonia Alvarez Castrillon, Marilia Yatabe, Jonas Bianchi, Juan Fernando Aristizabal, Diego Rey, Antonio Ruellas)
  6. Automatic Segmentation of Teeth and Alveolar bone using MONAI Label (Daniel Palkovics, Csaba Pinter, Andrés Diaz-Pinto)

SlicerDMRI

  1. Anatomically informed UKF tractography (Fan Zhang, Yogesh Rathi, Lauren J O’Donnell)
  2. Deep Diffusion MRI Registration (DDMReg) (Fan Zhang, William M. Wells III, Lauren J O’Donnell)
  3. SWM Tractography Parcellation (Tengfei Xue, Fan Zhang, Chaoyi Zhang, Yuqian Chen, Yang Song, Nikos Makris, Yogesh Rathi, Weidong Cai, Lauren J. O’Donnell)
  4. White Matter Fiber Clustering with Deep Learning (Yuqian Chen, Chaoyi Zhang, Yang Song, Tengfei Xue, Nikos Makris, Yogesh Rathi, Weidong Cai, Fan Zhang, and Lauren J. O’Donnell)

Cloud

  1. Body Part Regression using IDC (Deepa Krishnaswamy, Andrey Fedorov)
  2. OHIF Mode Gallery (Alireza Sedghi, James Petts, Erik Ziegler)
  3. Kaapana and XNAT exploration on Google Cloud (Nadya Shusharina, Andrey Fedorov)
  4. Static DICOM Web for AI Assissted Annotations on AWS (Chris Hafey, Gang Fu, Jordan Kojouharov, Qing Liu, Dmitry Pavlov, Andres Diaz-Pinto, Sachidanand Alle)
  5. OHIF deployment on Google Cloud (Andrey Fedorov, Igor Octaviano, Steve Pieper)

Infrastructure

  1. Slicer 5 Release (Sam Horvath, Jean-Christophe Fillion-Robin, Steve Pieper, Andras Lasso)
  2. SlicerPipelines (Connor Bowley, Sam Horvath)
  3. Slicer Internationalization (Sonia Pujol, Steve Pieper, Andras Lasso, Mamadou Camara, Jean-Christophe Fillion-Robin, Ibrahima Fall, Samba Diaw, Aissa Mboup, Fryderyk Kögl, Attila Nagy, Adriana Vilchis Gonzalez, Theodore Aptekarev, Pedro Moreira, Andrey Fedorov, Ahmedou Moulaye, Yahya Tfeil)
  4. Update the Chest Imaging Platform extension to support Slicer 5 (Rudolf Bumm, Raul San Jose Estepar, Andras Lasso, Steve Pieper)
  5. Batch Anonymization(Hina Shah, Juan Carlos Prieto, Fryderyk Kögl)

Registrants

Do not add your name to this list below. It is maintained by the organizers based on your registration. Register here.

List of registered participants so far (names will be added here after processing registrations):

  1. Steve Pieper , Isomics, Inc. , USA
  2. HINA SHAH , UNC Chapel Hill , USA
  3. YAHYA TFEIL , UNIVERSITY OF NOUAKCHOTT ALASSRIYA , Mauritania
  4. Monica García Sevilla , Universidad de Las Palmas de Gran Canaria , Spain
  5. Rafael Palomar , Oslo University Hospital / NTNU , Norway
  6. Ismail Irmakci , Feinberg School of Medicine - Northwestern University , USA
  7. Miguel Xochicale , King’s College London , United Kingdom
  8. Adama Rama WADE , École Supérieure Polytechnique (ESP) , Senegal
  9. Li Zhenzhu , Department of Neursosurgery, Hwa Mei Hospital, University of Chinese Academy of Sciences, Ningbo, China； , China
  10. Gang Fu , Amazon , USA
  11. Maxime Gillot , University of Michigan , USA
  12. Baptiste Baquero , University of Michigan , USA
  13. Simon Drouin , École de technologie supérieure , Canada
  14. Tina Kapur , Brigham and Women’s Hospital, Harvard Medical School , USA
  15. Loraine Franke , University of Massachusetts Boston , USA
  16. Harneet Cheema , Brigham and Women’s Hospital and Harvard Medical School, U Ottawa , Canada
  17. Fryderyk Kögl , Brigham and Women’s Hospital and Harvard Medical School, Technical University of Munich , USA
  18. Sonia Pujol , Brigham and Women’s Hospital, Harvard Medical School , USA
  19. Daniel Haehn , University of Massachusetts Boston , USA
  20. Juan Ruiz-Alzola , Universidad de Las Palmas de Gran Canaria , Spain
  21. Felix von Haxthausen , University of Lübeck , Germany
  22. Deepa Krishnaswamy , Brigham and Women’s Hospital , USA
  23. Antonio Cartón , Hospital Universitario La Paz , Spain
  24. Yi Shen , HIT , China
  25. Ahmedou Moulaye IDRISS , Faculty of Medicine, University of Nouakchott Al Asriya , Mauritania
  26. Csaba Pinter , EBATINCA / Pixel Medical , Spain
  27. Adam Wittek , The University of Western Australia , Australia
  28. Reuben Dorent , King’s College London , United Kingdom
  29. David García-Mato , Ebatinca S.L. , Spain
  30. Rebecca Hisey , Queen’s University , Canada
  31. Leah Groves , Queens University , Canada
  32. xi cao , changshu hospital of chinese medicine , China
  33. Sen Li , École de Technologie Supérieure , Canada
  34. Khaled Younis , Philips , United States
  35. Lina Mekki , Johns Hopkins University , United states
  36. Yahia Megahed , University of Central Florida , USA
  37. Étienne Léger , Brigham and Women’s Hospital , Canada
  38. Lipeng Ning , Brigham and Women’s Hospital , USA
  39. Ahmed Mahran , Toronto General hosptial , Canada
  40. Nirav Patel , IIT Madras , India
  41. Saidou TALLA , École Supérieure Polytechnique (ESP) , Sénégal
  42. Rudolf Bumm , Kantonsspital Graubünden , Switzerland
  43. Andras Lasso , PerkLab, Queen’s University , Canada
  44. Lucia Cevidanes , Univ. of Michigan , USA
  45. Gabor Fichtinger , Queen’s University , Canada
  46. Ron Kikinis , Harvard Medical School , USA
  47. Yousef Rajaeitabrizi , IAC , Spain
  48. Kate Kazlovich , Toronto General Hospital , Canada
  49. Raymond Yang , University of Massachusetts Boston , USA
  50. Joaquin Olivares , Universidad de Córdoba , Spain
  51. Xiang Chen , Memorial University of Newfondland , China
  52. Motoki Katsube , Kyoto University , Japan
  53. Sarah Frisken , Brigham and Women’s Hospital , USA
  54. Adam Rankin , Robarts Research Institute , Canada
  55. Connor Haberl , Carleton University , Canada
  56. Alexandra Golby , Brigham and Women’s Hospital/Harvard Medical School , USA
  57. Ron Kikinis , Harvard Medical School , USA
  58. Badiaa , Abdelmalek Essaadi University , Morocco
  59. Ole Vegard Solberg , SINTEF , Norway
  60. Geir Arne Tangen , SINTEF , Norway
  61. Javier Perez deFrutos , SINTEF , Norway
  62. Andrey Fedorov , Brigham and Women’s Hospital/Harvard Medical School , USA
  63. Nadya Shusharina , Mass General Brigham /Harvard Medical School , USA
  64. Kumar Punithakumar , University of Alberta , Canada
  65. Junichi Tokuda , Brigham and Women’s Hospital , USA
  66. Masoom Haider , Univ of Toronto , Canada
  67. Souleymane Diao , Cheikh Anta Diop University , Sénégal
  68. Mo Alsad , Research Associate , United Kingdom
  69. Sara Rolfe , Seattle Children’s Research Institute and University of Washington , USA
  70. Samantha Horvath , Kitware Inc , USA
  71. Theodore Aptekarev , Slicer Community , Russia
  72. Pedro Moreira , Brigham and Women’s Hospital/Harvard Medical School , USA
  73. Eve LoCastro , Memorial Sloan Kettering Cancer Center , USA
  74. Tamas Ungi , Queen’s University , Canada
  75. Mauro Ignacio Dominguez , Independent , Argentina
  76. Erik Ziegler , Open Health Imaging Foundation / Radical Imaging , Netherlands
  77. Antonio , Hospital Universitari Arnau de Vilanova , Spain
  78. Alicia Pose Díez de la Lastra , Universidad Carlos III de Madrid , Spain
  79. Alireza Sedghi , OHIF , Canada
  80. James Hanks , MGH/OHIF , USA
  81. Sanket Deshpande , Carpl.ai , India
  82. Rohit Takhar , NSIT , India
  83. Mónica Iturrioz , Brigham and Women’s hospital , USA
  84. Ruben San Jose Estepar , BWH , USA
  85. Michael Dada , Federal University of Technology, Minna , Nigeria
  86. Ron Alkalay , Beth Israel Deaconess Medical Center , USA
  87. Sanni Henry Ananyi , Federal University of Technology Minna , Nigeria
  88. Wenran Cai , University of Tokyo , Japan
  89. Suleiman Jamila , Federal University of Technology, Minna. , Nigeria
  90. Idowu Abdulsemiu Babatunde , Federal University of Technology Minna Niger State , Nigeria
  91. Nayra Pumar Carreras , Ebatinca , Spain
  92. Manjula Herath , Malmo University , Sweden
  93. Robabeh Salehiozoumchelouei , Instituto de Astrofísica de Canarias (IAC) , Spain
  94. jonas bianchi , University of the Pacific , USA
  95. Houssem Gueziri , Montreal Neurological Institute / McGill University , Canada
  96. Attila Nagy , University of Szeged, Department of Medical Physics and Informatics , Hungary
  97. Juan María Piñera Parrilla , SurgicalWorks , Spain
  98. Kazuaki Hara , The University of Tokyo , Japan
  99. Mamadou Samba CAMARA , University of Dakar , Senegal
  100. Dániel Palkovics , Semmelweis University , Hungary
  101. Parikshit Juvekar , Brigham & Women’s Hospital, Department of Neurosurgery , USA
  102. James Petts , Ovela Solutions , United Kingdom
  103. Fan Zhang , Brigham and Women’s Hospital , USA
  104. Keita , École Supérieure Polytechnique (ESP) de Dakar , Sénégal
  105. Mamadou Moustapha DIAGNE , ESP , Senegal
  106. Gregory Fischer , WPI , USA
  107. Javier Pascau , Universidad Carlos III de Madrid , Spain
  108. Ariela Shahvar , Western University , Canada
  109. Samuelle St-Onge , École de technologie supérieure (ÉTS) , Canada
  110. Andrey Titov , École de technologie supérieure , Canada
  111. Tengfei Xue , Harvard Medical School/University of Sydney , Australia
  112. Yiwei Jiang , Worcester Polytechnic Institute , USA
  113. Yuqian Chen , Harvard Medical School , USA
  114. Gabriella d’Albenzio , The Intervention Centre (OUS) , Norway
  115. Raul San Jose Estepar , Brigham and Women’s Hospital , USA
  116. Kyle Sunderland , Queen’s University , Canada
  117. Árpád Márki , University of Szeged , Hungary
  118. Martin Dr. Cseh , University of Szeged Faculty of Pharmacy , Hungary
  119. Sandy Wells , HMS / BWH , USA
  120. Chris Hafey , AWS , USA
  121. Matt Lungren , Amazon , USA
  122. Jean-Christophe Fillion-Robin , Kitware , USA
  123. Peter Traneus Anerson , Retired , U.S.A.
  124. Adriana Herlinda Vilchis González , Universidad Autónoma del Estado de México , México
  125. Richard Doerer , Modl3d, LLC , USA
  126. Andres Diaz-Pinto , NVIDIA , United Kingdom
  127. Randy Gollub , MGH , USA
  128. Luis , University of Minho , Portugal
  129. Igor Octaviano , Pontifical Catholic University of Minas Gerais , Brazil
  130. Pape Mady THIAO , École militaire de santé de Dakar , Sénégal
  131. Carl-Fredrik Westin , Brigham and Womens Hospital , USA

Statistics

Attendees per country Attendees timezones

History

Please read about our experience in running these events since 2005: Increasing the Impact of Medical Image Computing Using Community-Based Open-Access Hackathons: the NA-MIC and 3D Slicer Experience.