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NA-MIC Project Weeks

Welcome to the web page for the 42nd Project Week!

This event took place Jan 27th - Jan 31st, 2025 at Las Palmas, Gran Canaria, Spain, in person. If you have any questions, you can contact the organizers.

Preparation meetings

We held weekly preparation meetings at 10AM EST (4PM CET) on Tuesdays on Zoom, starting November 19, 2024.

Venue

Discord

The Discord application is used to communicate between team members and organize activities before and during Project Week. Please join the Project Week Discord server as soon as possible and explore its functionality before the workshop. For more information on the use of Discord before and during Project Week, please visit this page.

Agenda

How to add this calendar to your own?

Breakout sessions

3D Slicer Breakout Slides

Projects

To learn how to create or update project pages, please refer to the contributing project pages section.

The PW42_2025_GranCanaria event has a total of 47 projects.

DICOM

  1. DICOM metadata databases (Marco Nolden, Andrey Fedorov, Steve Pieper)

  2. Conversion of bone marrow smear dataset from MIRAX format into DICOM (Daniela Schacherer, David Clunie, Andrey Fedorov)

  3. Evaluation of imi-bigpicture/wsidicomizer as a tool for conversion into DICOM whole slide imaging format (Andrey Fedorov, Daniela Schacherer, David Clunie, Max Fischer)

  4. DICOM WSI Interoperability with Kaapana (Maximilian Fischer, Marco Nolden, Klaus Maier-Hein, Daniela Schacherer, Andrey Fedorov, David Clunie)

  5. Optimize DICOMweb access to IDC data (Daniela Schacherer, David Clunie, Steve Pieper, Andrey Fedorov, Joël Spaltenstein)

  6. Creating DICOM-compatible cancer annotations for NLST (Deepa Krishnaswamy, Suraj Pai, Leonard Nürnberg, Andrey Fedorov, David Clunie)

Infrastructure

  1. OHIF Tools: StackScroll for fusion viewport, 4D interaction (Joost van Griethuysen)

  2. Visual DICOM browser (Davide Punzo, Andras Lasso)

  3. Finalize Slicer Icon set update infrastructure (Sam Horvath, Wendy Plesniak)

  4. SlicerSOFA - SlicerROS2 Integration (Eléonore Germond, Rafael Palomar, Paul Baksic, Steve Pieper, Junichi Tokuda, Laura Connolly, Anton Deguet)

  5. Creating Linux distro-agnostic binaries for Plastimatch (Paolo Zaffino, Andrey Fedorov, Jean-Christophe Fillion-Robin)

  6. 3D Slicer for Latin America (Sonia Pujol, Luiz Murta, Douglas Samuel Gonçalves, Lucas Sanchez Silva, Paulo Eduardo de Barros Veiga, Paulo Guilherme Pinheiro Pereira, Mirela Teixeira Cazzolato, Adriana Herlinda Vilchis González, Enrique Hernández Laredo, Victor Manuel Montaño Serrano, Monserrat Ríos-Hernández, Valeria Gómez Valdes, Juan Carlos Avila Vilchis, Fatou Bintou Ndiaye, Mohamed Alalli Bilal, Andras Lasso, Steve Pieper, Jean-Christophe Fillion-Robin)

  7. Builds of Slicer for ARM-based systems Mac and Linux (Andres Diaz-Pinto, Steve Pieper, Rafael Palomar, Jean-Christophe Fillion-Robin, Andras Lasso, Mauro I. Dominguez, Robin Peretzke)

  8. Development of a 3D Slicer Extension to Support Samsung Medical Center Protocol Based PreOperative Planning for Liver Transplantation and Liver Cancer Surgery (Soyoung Lim, Hyejeong Hong)

  9. MorphoDepot: Collaborative segmentation projects (Murat Maga, Steve Pieper, Andrey Fedorov)

  10. MHubRunner - MHub.ai for 3D Slicer (v2) (Leonard Nürnberg, Andrey Fedorov, Hugo Aerts)

  11. Slicer-SOFA: Integration of SOFA with 3D Slicer for Advanced Medical Simulations (Rafael Palomar, Paul Baksic, Steve Pieper, Jean-Christophe Fillion-Robin, Andras Lasso, Sam Horvath)

  12. Bringing 3D Slicer to the web with Slicer trame (Thibault Pelletier)

  13. Compile ITK for Android ARM64 (Attila Nagy, Attila Tanács)

  14. Robust boolean operations library for VTK/Slicer (Mauro I. Dominguez, Andras Lasso, Steve Pieper, Jean-Christophe Fillion-Robin)

  15. JSON based scene file format (Davide Punzo, Andras Lasso, Jean-Christophe Fillion-Robin, Andres Diaz-Pinto)

  16. Infrastructure for custom terminology and color tables in Slicer (Csaba Pinter, Andras Lasso, Murat Maga, Steve Pieper, Andriy Fedorov, David Clunie)

IGT and Training

  1. NousNav future plans and grant brainstorming (Sam Horvath, Rebecca Hisey, Gabriella d’Albenzio, Steve Pieper, Alex Golby, Tina Kapur)

  2. Nephrostomy tutor low cost training system for percutaneous nephrostomy (Rebecca Hisey, Gabriella d’Albenzio, Kyle Sunderland, Mamadou Camara, Gabor Fichtinger)

VR/AR and Rendering

  1. Lighting problems with latest SlicerVR (Csaba Pinter, Andras Lasso, Matt Jolley, Jean-Christophe Fillion-Robin)

  2. Compute shaders and customized shaders for surface rendering (Simon Drouin, Rafael Palomar)

Segmentation / Classification / Landmarking

  1. Comparison of crowd sourced vs. model generated accuracy on abdominal ultrasound (Jacqueline Foody, Hallee Wong, Mike Jin, Tina Kapur)

  2. 3D and 2D Radiology Copilot Integration in 3D Slicer (Andres Diaz-Pinto, Andras Lasso, Vishwesh Nath, Nigel Nelson, Sean Huver, Mingxin Zheng, Wenqi Li, Xueyan Mei, Zelong Liu, Tim Deyer)

  3. New Slicer Module for Visual Assessment of Pulmonary Congestion from Ultrasound (Mike Jin, Tamas Ungi, Fahimeh Fooladgar, Tina Kapur)

  4. Kidney and tumor segmentation for surgery planning (Steve Pieper, Sylvia Ladstatter, Kevin Cleary, Andres Diaz-Pinto, Mauro I. Dominguez)

  5. TorchXRayVision Meets 3D Slicer: Bridging Deep Learning and Medical Imaging (Constantin Constantinescu, Juan Ruiz-Alzola, Csaba Pintér, Oscar Martin, Borja Fernandez)

  6. Simulation of Spine Curve Correction Through 3D Reconstruction Techniques and Parameter Measurement (Cristina Soriano, Maria Ordieres, Javier Pascau)

  7. Determination of surgical class based on the curvature and shape of the carotid syphon (Attila Tanács, Ferenc Dezső Bakó, Attila Nagy)

  8. Improved automated segmentation of dental CBCT images with Auto3DSeg (Csaba Pinter, Daniel Palkovics, Andres Diaz-Pinto)

  9. Deploying ScribblePrompt and MultiverSeg for interactive segmentation as a 3D Slicer extension (Hallee Wong, Steve Pieper)

  10. Review of segmentation results quality across various multi-organ segmentation models (Andrey Fedorov, Ron Kikinis, David Clunie, Steve Pieper, Andres Diaz-Pinto, Tamaz Amiranashvili, Murong Xu, Klaus Maier-Hein, Bjoern Menze)

  11. Integration of Jülich Brain Atlas to 3D Slicer EpiSTIM project (Sara Fernandez Vidal, Valerio Frazzini)

  12. White matter tract segmentation in Slicer (Robin Peretzke, Steve Pieper)

  13. Deploying OvSeg in Slicer (Paolo Zaffino, Thomas Buddenkotte)

  14. Remote VISTA3D server (NIM) for CT segmentation (Andres Diaz-Pinto, Stephen Aylward)

  15. Open Model for Anatomy Segmentation in Computer Tomography (Murong Xu, Tamaz Amiranashvili, Bjoern Menze, Andrey Fedorov)

  16. Automatic classification of MR scan sequence type (Deepa Krishnaswamy, Andrey Fedorov, Joost van Griethuysen)

Quantification and Computation

  1. Extending Radiotherapy Treatment Planning Capabilities within SlicerRT (Niklas Wahl, Lina Bucher, Francesca Spadea, Csaba Pinter)

  2. Spinal musculoskeletal module for computing vertebral specific loading (Csaba Pinter, Ron Alkalay, Dennis Anderson, Vy Hong, Nils Rehtanz, Steve Pieper, Andras Lasso, Ron Kikinis)

  3. Update PyRadiomics and SlicerRadiomics build and CI (Joost van Griethuysen, Jean-Christophe Fillion-Robin)

  4. SlicerImageAugmenter : evolution and new features (Ciro Benito Raggio, Paolo Zaffino, Maria Francesca Spadea)

  5. DeCA: Dense Correspondence Analysis Toolkit for Shape Analysis (Sara Rolfe, Murat Maga)

Uncategorized

This section lists projects that either have no category assigned, are assigned to the “Uncategorized” category, or are assigned to a different category than the ones listed above. If you are unable to find a category that is suitable for your project, or believe that a specific category is missing, please discuss it with the organizers.

Registrants

Do not add your name to this list below. It is maintained by the organizers based on your registration.

List of registered participants so far (names will be added here after processing registrations):

  1. Rafael Palomar, Oslo University Hospital, Norway
  2. Simon Drouin, École de technologie supérieure, Canada
  3. Steve Pieper, Isomics, Inc., USA
  4. Mamadou Samba Camara, Cheikh Anta Diop University of Dakar, Senegal
  5. Davide Punzo, Freelancer DNA HIVE, France
  6. Murat Maga, University of Washington, USA
  7. Constantin Constantinescu, Lucian Blaga University of Sibiu, Romania
  8. Juan Ruiz-Alzola, University of Las Palmas de Gran Canaria, Spain
  9. Tina Kapur, Brigham and Women’s Hospital, Harvard Medical Schools, USA
  10. Sam Horvath, Kitware, USA
  11. Ciro Benito Raggio, Karlsruhe Instute of Tecnology, Germany
  12. Domenico Riggio, Karlsruhe Instute of Tecnology, Germany
  13. Thibault Pelletier, Kitware WAS, France
  14. Paolo Zaffino, Magna Graecia University of Catanzaro, Italy
  15. Murong Xu, University of Zurich, Switzerland
  16. Tamaz Amiranashvili, University of Zurich, Switzerland
  17. Hallee Wong, MIT, USA
  18. Bjoern Menze, University of Zurich, Switzerland
  19. Francesca Spadea, Karlsruher Institut für Technologie, Germany
  20. Joost van Griethuysen, The Netherlands Cancer Institute, The Netherlands
  21. Lina Bucher, Karlsruher Institut für Technologie, Germany
  22. Sara Rolfe, Seattle Children’s Research Institue, USA
  23. Andrey Fedorov, Brigham and Women’s Hospital, Harvard Medical Schools, USA
  24. Andras Lasso, Queen’s University, Canada
  25. Gabor Fichtinger, Queen’s University, Canada
  26. Kyle Sunderland, Queen’s University, Canada
  27. Rebecca Hisey, Queen’s University, Canada
  28. Jacqueline Foody, Mass Gen Brigham/Centaur Labs, USA
  29. Andres Diaz-Pinto, NVIDIA, UK
  30. Csaba Pintér, EBATINCA, Spain
  31. Nayra Pumar Carreras, EBATINCA, Spain
  32. Mauro Ignacio Dominguez, Independent, Argentina
  33. Mike Jin, Harvard Medical School/Centaur Labs, USA
  34. David Clunie, PixelMed, USA
  35. Hyejeong Hong, Samsung Medical Center, South Korea
  36. Soyoung Lim, Samsung Medical Center, South Korea
  37. Niklas Wahl, DKFZ Heidelberg, Germany
  38. Ron Kikinis, Brigham and Women’s Hospital and Harvard Medical School, USA
  39. Zora Kikinis, Brigham and Women’s Hospital and Harvard Medical School, USA
  40. Jean-Christophe Fillion-Robin, Kitware Inc., USA
  41. Deepa Krishnaswamy, Brigham and Women’s Hospital and Harvard Medical School, USA
  42. Leonard Nürnberg, Harvard Medical School, Brigham and Women’s Hospital, USA
  43. Douglas Samuel Gonçalves, University of São Paulo (USP), Brazil
  44. Lucas Sanchez Silva, University of São Paulo (USP), Brazil
  45. Gabriella d’Albenzio, Queen’s University, Canada
  46. Maximilian Fischer, German Cancer Research Center, Germany
  47. Víctor Manuel Montaño Serrano, Universidad Autónoma del Estado de México, Mexico
  48. Juan Carlos Avila Vilchis, Universidad Autónoma del Estado de México, Mexico
  49. Javier Pascau, Universidad Carlos III de Madrid, Spain
  50. Marco Nolden, German Cancer Research Center (DKFZ), Germany
  51. Eléonore Germond, IMT Atlantique, France
  52. Attila Tanács, University of Szeged, Hungary
  53. Adriana H. Vilchis González, Universidad Autnoma del Estado de México, Mexico
  54. Joël Spaltenstein, Agora Care SA, Switzerland
  55. Attila Nagy, University of Szeged, Hungary
  56. Robin Peretzke, German Cancer Research Center, Germany
  57. Klaus Maier-Hein, German Cancer Research Center, Germany
  58. Sara Fernandez Vidal, Paris Brain Institute, France
  59. Cristina Soriano, Digital Anatomics SL, Spain
  60. Maria Ordieres, Digital Anatomics SL, Spain
  61. Hans Knutsson, Linkoping University, Sweden
  62. Meritxell Gomez Martinez, Fundacio Eurecat, Spain
  63. Daniela Schacherer, Fraunhofer Mevis, Germany

Statistics

Organizers

Local organizing committee

Juan Ruiz-Alzola, PhD, Professor of Imaging Technologies, director of the Grupo de Tecnología Médica y Audiovisual (GTMA), Instituto Universitario de Investigaciones Biomédicas y Sanitarias (IUIBS), Universidad de Las Palmas de Gran Canaria (ULPGC)

Csaba Pintér, PhD, CTO, EBATINCA

The EBATINCA team. For inquiries please send email to namic@ebatinca.com

Global Project Week organizing committee

History

Please read about our experience in running these events since 2005: Increasing the Impact of Medical Image Computing Using Community-Based Open-Access Hackathons: the NA-MIC and 3D Slicer Experience).