Back to
Projects List
Importing Labelled Sulci from Morphologist Pipeline (Brainvisa). Creating a new 3D Slicer terminologie
Key Investigators
- Sara Fernandez Vidal (ICM Paris Brain Institute)
- Valerio Frazzini (ICM Paris Brain Institute & APHP Pitié Salpêtrière Hospital)
Presenter location: In-person
Project Description
We are rewritting the entire epiSTIM toolbox (for SEEG procedures) as a 3D Slicer Extension and adding additional features requested by the clinicians. One of them is the import of labelled sulcis from T1 Morphologist (in Brainvisa Toolbox). To procced, first we need to create a Terminologie for the sulci (and a cbtl? )
Objective
- Create the new terminology for sulci
- Import the sulci Segmentation (from BrainVisa T1 Morphologist Pipeline ) associating a new Teminology
Approach and Plan
- Find a official or Standard Terminology/Ontology of brain sulci
- Create the 3D Slicer Terminology
- Associate the Terminology to the objects imported from T1 Morphologist
Progress and Next Steps
- Import of anatomical labelled sulci ok.
- Terminology : work in progress !
Illustrations
![Data Model epiSTIM](/PW41_2024_MIT/Projects/TerminologiesForSulciAndBasalGangliaEpistim3DSlicerExtension/epiSTIMDataModelWithLabelledSulciFromMorphologist.png)
![nomenclature_translation](/PW41_2024_MIT/Projects/TerminologiesForSulciAndBasalGangliaEpistim3DSlicerExtension/nomenclature_translation.png)
Background and References
Morphologist Pipeline
BrainInfo Ontology API
TA Viewer
How to create 3D Slicer Terminologies
SNOMED-CT, DICOM use it
UBERON (multi especes ontology)
No response